JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC7A13_chr8_86209063_86235381	0/0	c0021	1413	1	0	0	0	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0022	1413	1	0	0	0	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0023	1413	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0024	1412	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A14_chr3_170454548_170591075	1/1	c0001	2316	160	28	32	59	10	29	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0002	2316	103	30	16	43	2	12	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0003	2316	9	9	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0004	2316	6	6	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0005	2316	6	5	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0006	2316	5	0	0	5	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0007	2316	4	3	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0008	2316	4	0	0	4	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0009	2316	4	0	0	4	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0010	2316	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0011	2316	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0012	2316	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0013	2316	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0014	2316	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0015	2316	1	0	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	c0016	2316	1	0	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A1_chr13_29504414_29600688	0/1	c0001	1890	174	44	36	64	12	17	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0002	1890	74	0	18	50	1	5	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	1/0	c0003	1890	30	13	4	6	0	6	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0004	1890	15	15	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0005	1890	7	7	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0006	1890	5	0	2	0	1	2	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0007	1890	4	4	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0008	1890	3	3	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0009	1890	2	2	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0010	1890	2	2	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0011	1890	2	2	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0012	1890	2	2	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0013	1890	1	0	1	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0014	1890	1	0	0	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0015	1890	1	0	1	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0016	1890	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0017	1890	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0018	1890	1	0	0	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0019	1890	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0020	1890	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0021	1890	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	c0022	1890	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A2_chr8_17492088_17575566	1/1	c0001	1977	305	73	65	115	15	35	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0002	1977	61	0	1	58	0	2	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0003	1977	32	0	4	19	0	9	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0004	1977	15	14	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0005	1977	5	1	2	2	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0006	1977	5	1	4	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0007	1977	5	0	0	5	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0008	1977	4	0	3	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566