JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC7A2_chr8_17492088_17575566	0/0	c0009	1977	3	0	0	2	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0010	1977	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0011	1977	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0012	1977	2	0	0	2	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0013	1977	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0014	1977	1	0	0	0	1	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0015	1977	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0016	1977	1	0	0	0	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0017	1977	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0018	1977	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	c0019	1977	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A3_chrX_70920579_70936096	0/1	c0001	1860	139	43	25	62	1	7	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0002	1860	113	8	21	61	7	16	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	1/0	c0003	1860	43	23	13	1	2	3	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0004	1860	3	0	0	0	0	3	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0005	1860	2	2	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0006	1858	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0007	1859	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0008	1860	1	0	0	0	1	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0009	1859	1	1	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0010	1860	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0011	1860	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0012	1860	1	1	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0013	1861	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0014	1860	1	1	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0015	1860	1	1	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0016	1860	1	0	0	0	0	1	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	c0017	1860	1	0	1	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A4_chr22_21023718_21037561	0/0	c0001	1908	151	27	24	84	0	16	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	1/0	c0002	1908	92	31	18	20	9	13	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0003	1908	83	1	9	71	2	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0004	1908	31	2	13	8	4	4	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/1	c0005	1908	29	1	13	5	3	6	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0006	1908	19	16	3	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0007	1908	12	8	0	0	0	4	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0008	1908	5	4	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0009	1908	3	3	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0010	1908	3	2	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0011	1908	2	0	0	2	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0012	1908	2	0	0	0	0	2	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0013	1908	1	0	0	0	0	1	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0014	1908	1	0	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0015	1908	1	1	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0016	1908	1	0	0	1	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0017	1908	1	1	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0018	1908	1	0	0	1	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0019	1908	1	0	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0020	1908	1	1	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0021	1908	1	0	0	1	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	c0022	1908	1	0	0	1	0	0	copy fasta	SLC7A4	chr22	21023718	21037561