JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC7A5_chr16_87825023_87874507	1/0	c0001	1524	313	47	62	144	15	44	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/1	c0002	1524	48	34	7	0	3	3	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0003	1524	9	0	7	2	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0004	1524	4	4	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0005	1524	3	2	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0006	1524	3	3	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0007	1524	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0008	1524	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0009	1524	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0010	1524	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0011	1524	1	0	0	0	0	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0012	1524	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0013	1524	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0014	1524	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0015	1524	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	c0016	1524	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A6OS_chr16_68293034_68315946	0/0	c0001	930	207	66	43	65	5	28	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	1/0	c0002	930	62	7	18	26	2	8	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0003	930	37	15	5	9	2	6	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/1	c0004	930	11	0	6	0	4	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0005	930	3	0	0	0	3	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0006	930	2	2	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0007	930	2	2	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0008	930	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0009	930	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0010	930	1	0	1	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	c0011	930	1	0	1	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6_chr16_68259526_68306819	1/1	c0001	1548	265	72	58	85	10	38	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	c0002	1548	11	11	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	c0003	1548	2	2	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	c0004	1548	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	c0005	1548	1	0	1	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	c0006	1548	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	c0007	1548	1	0	1	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A7_chr14_22768222_22820435	0/1	c0001	1536	147	10	28	85	7	16	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0002	1536	78	14	23	24	1	16	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0003	1536	56	8	12	33	0	3	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0004	1536	31	11	2	11	2	5	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	1/0	c0005	1536	30	20	1	6	2	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0006	1536	24	12	5	3	1	3	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0007	1536	11	9	0	1	0	1	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0008	1536	6	2	0	4	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0009	1536	5	1	2	0	0	2	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0010	1536	3	3	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0011	1536	2	2	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0012	1536	2	2	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0013	1536	1	0	0	1	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0014	1536	1	0	0	1	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0015	1536	1	0	0	1	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0016	1536	1	1	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435