JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC7A7_chr14_22768222_22820435	0/0	c0017	1536	1	1	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0018	1536	1	0	0	0	1	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	c0019	1536	1	0	1	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A8_chr14_23120295_23188660	0/1	c0001	1608	211	59	32	105	2	12	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	1/0	c0002	1608	108	23	25	37	6	16	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0003	1608	44	8	4	27	1	4	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0004	1608	8	1	2	0	1	4	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0005	1608	5	1	0	1	2	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0006	1608	3	3	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0007	1608	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0008	1608	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0009	1608	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0010	1608	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0011	1608	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0012	1608	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0013	1608	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0014	1608	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0015	1608	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0016	1608	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0017	1608	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	c0018	1608	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A9_chr19_32825511_32874767	1/1	c0001	1464	231	44	41	105	9	30	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0002	1464	95	24	8	52	4	7	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0003	1464	17	1	2	10	1	3	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0004	1464	16	6	1	3	1	5	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0005	1464	8	4	2	1	0	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0006	1464	7	1	3	0	3	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0007	1464	5	0	0	5	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0008	1464	3	3	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0009	1464	2	2	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0010	1464	2	2	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0011	1464	2	0	1	0	0	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0012	1464	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0013	1464	1	0	1	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0014	1464	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0015	1464	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0016	1464	1	0	0	0	0	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0017	1464	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0018	1464	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0019	1464	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0020	1464	1	0	0	0	0	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0021	1464	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0022	1464	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0023	1464	1	0	0	0	0	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0024	1464	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0025	1464	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0026	1464	1	0	1	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	c0027	1464	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC8A1_chr2_40092270_40457090	1/1	c0001	2922	231	88	43	76	6	16	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	c0002	2922	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090