JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC8A1_chr2_40092270_40457090	0/0	c0003	2922	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	c0004	2922	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	c0005	2922	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	c0006	2922	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A2_chr19_47423017_47476893	1/1	c0001	2766	225	63	45	76	11	28	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0002	2766	28	2	5	14	2	5	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0003	2766	16	1	6	8	0	1	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0004	2766	13	0	5	5	0	3	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0005	2766	11	9	2	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0006	2766	5	0	5	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0007	2766	4	4	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0008	2766	2	0	0	2	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0009	2766	2	2	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0010	2766	1	0	0	0	0	1	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0011	2766	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0012	2766	1	0	0	1	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0013	2766	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0014	2766	1	0	0	1	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0015	2766	1	0	0	1	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0016	2766	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0017	2766	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0018	2766	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	c0019	2766	1	0	0	0	1	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A3_chr14_70039215_70193951	0/1	c0001	2766	214	55	35	88	8	27	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0002	2766	43	18	11	6	4	4	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0003	2766	16	4	4	5	2	1	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0004	2766	5	5	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	1/0	c0005	2766	4	3	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0006	2766	3	0	0	1	0	2	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0007	2766	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0008	2766	1	0	0	0	1	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0009	2766	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0010	2766	1	0	0	1	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0011	2766	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0012	2766	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0013	2766	1	0	0	1	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0014	2766	1	0	0	0	1	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0015	2766	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0016	2766	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	c0017	2766	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8B1_chr12_113293771_113340109	1/1	c0001	1755	201	67	32	60	11	29	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0002	1755	59	10	1	43	0	5	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0003	1755	4	4	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0004	1755	3	3	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0005	1755	3	0	1	2	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0006	1755	3	3	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0007	1755	2	0	1	0	1	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0008	1755	2	1	1	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0009	1755	2	0	0	2	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0010	1755	1	0	0	1	0	0	copy fasta	SLC8B1	chr12	113293771	113340109