JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC8B1_chr12_113293771_113340109	0/0	c0011	1755	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0012	1755	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0013	1755	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	c0014	1755	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC9A1_chr1_27093809_27160125	0/0	c0001	2448	155	53	29	37	7	29	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/1	c0002	2448	67	20	16	16	6	8	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	c0003	2448	3	3	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	1/0	c0004	2448	3	0	1	0	1	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	c0005	2448	1	0	0	0	0	1	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	c0006	2448	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	c0007	2448	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	c0008	2448	1	0	0	1	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	c0009	2448	1	0	0	1	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	c0010	2448	1	0	0	1	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A2_chr2_102614553_102716355	1/1	c0001	2439	335	87	62	133	9	42	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	c0002	2439	3	0	0	3	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	c0003	2439	2	0	1	0	1	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	c0004	2439	2	0	2	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	c0005	2439	1	0	1	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	c0006	2439	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A3_chr5_465456_529449	0/0	c0001	2505	107	44	17	37	3	6	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	1/0	c0002	2505	49	0	8	35	2	3	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0003	2505	6	0	4	0	2	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0004	2505	5	1	1	2	1	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0005	2505	5	5	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0006	2505	5	0	5	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0007	2505	4	0	0	4	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0008	2505	4	3	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0009	2505	3	0	0	0	1	2	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0010	2505	3	0	0	1	0	2	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0011	2505	3	0	0	3	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0012	2505	2	2	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0013	2505	2	0	0	2	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0014	2505	2	2	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0015	2505	1	0	0	0	1	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0016	2505	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0017	2505	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0018	2505	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/1	c0019	2505	1	0	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0020	2505	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0021	2505	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0022	2505	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0023	2505	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0024	2505	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0025	2505	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0026	2505	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0027	2505	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0028	2505	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0029	2505	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0030	2505	1	0	0	0	0	1	copy fasta	SLC9A3	chr5	465456	529449