JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC9A3_chr5_465456_529449	0/0	c0031	2505	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	c0032	2505	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A4_chr2_102468226_102538972	1/0	c0001	2397	122	23	20	63	4	11	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0002	2397	102	24	18	39	6	15	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0003	2397	42	7	13	16	0	6	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0004	2397	33	3	1	29	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0005	2397	30	12	7	4	1	6	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0006	2397	9	9	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0007	2397	7	0	0	7	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0008	2397	4	1	1	1	1	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/1	c0009	2397	4	0	2	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0010	2397	3	3	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0011	2397	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0012	2397	2	1	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0013	2397	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0014	2397	2	0	0	2	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0015	2397	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0016	2397	2	0	0	0	0	2	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0017	2397	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0018	2397	1	0	0	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0019	2397	1	0	0	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0020	2397	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0021	2397	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0022	2397	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0023	2397	1	0	0	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0024	2397	1	0	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0025	2397	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0026	2397	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0027	2397	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0028	2397	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0029	2397	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	c0030	2397	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A5_chr16_67243979_67277191	1/1	c0001	2691	142	39	32	31	11	27	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0002	2691	29	28	1	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0003	2691	10	5	1	0	0	4	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0004	2691	8	2	0	6	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0005	2691	2	0	0	0	0	2	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0006	2691	1	0	1	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0007	2691	1	0	0	0	1	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0008	2691	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0009	2691	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0010	2691	1	0	1	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0011	2691	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0012	2691	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0013	2691	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0014	2691	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0015	2691	1	0	0	1	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0016	2691	1	0	0	1	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0017	2691	1	0	0	0	0	1	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	c0018	2691	1	0	0	1	0	0	copy fasta	SLC9A5	chr16	67243979	67277191