JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC9A6_chrX_135980435_136052269	1/1	c0001	2040	176	45	33	70	5	21	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	c0002	2040	20	0	0	19	0	1	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	c0003	2039	1	0	0	1	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	c0004	2040	1	1	0	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	c0005	2040	1	0	0	1	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A7_chrX_46594251_46764118	0/0	c0001	2181	165	52	33	56	5	19	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	1/1	c0002	2181	35	1	11	13	3	5	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0003	2181	32	7	2	20	0	3	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0004	2181	6	0	3	2	1	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0005	2181	2	0	2	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0006	2181	2	0	0	1	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0007	2181	2	0	0	2	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0008	2181	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0009	2182	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0010	2180	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0011	2182	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0012	2181	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	c0013	2184	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A8_chr20_49807828_49897242	0/1	c0001	1746	238	35	33	142	10	17	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	1/0	c0002	1746	63	13	15	27	2	5	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	c0003	1746	51	40	11	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	c0004	1746	3	0	1	0	2	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	c0005	1746	1	0	0	0	0	1	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	c0006	1746	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	c0007	1746	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	c0008	1746	1	0	0	0	0	1	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	c0009	1746	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A9_chr3_143260222_143853468	1/1	c0001	1938	53	20	14	13	0	4	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0002	1938	35	21	5	6	0	3	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0003	1938	3	3	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0004	1938	2	2	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0005	1938	2	2	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0006	1938	2	2	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0007	1938	2	0	0	1	0	1	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0008	1938	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0009	1938	1	0	0	0	0	1	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0010	1938	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0011	1938	1	0	0	0	0	1	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0012	1938	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0013	1938	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0014	1938	1	0	1	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0015	1938	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	c0016	1938	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9B1_chr4_102895928_103024705	0/1	c0001	1548	313	80	52	135	12	33	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B1_chr4_102895928_103024705	0/0	c0002	1548	2	2	0	0	0	0	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B1_chr4_102895928_103024705	1/0	c0003	1548	1	0	0	0	0	0	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B1_chr4_102895928_103024705	0/0	c0004	1548	1	0	0	1	0	0	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B1_chr4_102895928_103024705	0/0	c0005	1548	1	0	0	0	0	1	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B2_chr4_103017253_103081761	1/1	c0001	1614	280	73	48	120	11	26	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0002	1614	59	5	15	28	1	10	copy fasta	SLC9B2	chr4	103017253	103081761