JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC9B2_chr4_103017253_103081761	0/0	c0003	1614	4	4	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0004	1614	2	2	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0005	1614	2	0	0	2	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0006	1614	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0007	1614	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0008	1614	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0009	1614	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0010	1614	1	0	1	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0011	1614	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0012	1614	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0013	1614	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	c0014	1614	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9C1_chr3_112135898_112299216	0/0	c0001	3534	98	22	20	42	6	8	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0002	3534	88	10	14	44	3	17	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0003	3534	74	16	10	40	2	6	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/1	c0004	3534	29	10	12	1	4	1	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	1/0	c0005	3534	16	13	2	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0006	3534	14	0	2	12	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0007	3534	11	0	7	0	1	3	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0008	3534	6	2	0	4	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0009	3534	5	4	1	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0010	3534	5	0	3	0	2	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0011	3534	4	4	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0012	3534	3	3	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0013	3534	3	0	0	3	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0014	3534	2	2	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0015	3534	2	2	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0016	3534	2	0	0	0	0	2	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0017	3534	2	0	2	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0018	3534	2	0	0	1	0	1	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0019	3534	1	0	0	1	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0020	3534	1	1	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0021	3534	1	1	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0022	3534	1	0	0	1	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0023	3534	1	0	0	1	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	c0024	3534	1	0	1	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C2_chr1_173495460_173608072	1/1	c0001	3375	140	20	31	64	11	12	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0002	3375	103	3	23	58	3	16	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0003	3375	13	12	1	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0004	3375	9	9	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0005	3375	9	7	2	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0006	3375	7	5	2	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0007	3375	6	6	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0008	3375	6	6	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0009	3375	6	6	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0010	3375	3	0	3	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0011	3375	3	3	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0012	3375	2	2	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0013	3375	2	0	0	2	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0014	3375	2	2	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072