JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC9C2_chr1_173495460_173608072	0/0	c0015	3375	1	0	0	0	0	1	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0016	3375	1	1	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0017	3375	1	0	0	0	0	1	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0018	3375	1	1	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	c0019	3375	1	1	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLCO1A2_chr12_21259600_21339917	1/1	c0001	2013	258	57	40	131	9	19	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0002	2013	13	11	2	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0003	2013	10	0	3	0	1	6	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0004	2013	8	8	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0005	2013	6	6	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0006	2013	3	3	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0007	2013	3	0	3	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0008	2013	2	0	2	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0009	2013	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0010	2013	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0011	2013	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0012	2013	1	0	0	0	0	1	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0013	2013	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0014	2013	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	c0015	2013	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1B1_chr12_21126194_21244796	0/0	c0001	2076	89	34	4	42	0	9	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/1	c0002	2076	68	3	15	35	4	10	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0003	2076	68	13	7	45	0	3	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0004	2076	27	1	7	19	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	1/0	c0005	2076	16	10	5	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0006	2076	13	7	4	1	1	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0007	2076	8	1	2	0	3	2	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0008	2076	3	3	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0009	2076	3	3	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0010	2076	3	3	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0011	2076	2	0	0	2	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0012	2076	2	0	0	2	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0013	2076	2	0	0	2	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0014	2076	2	2	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0015	2076	1	0	1	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0016	2076	1	0	0	0	0	1	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0017	2076	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0018	2076	1	0	1	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0019	2076	1	1	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0020	2076	1	1	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0021	2076	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0022	2076	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0023	2076	1	1	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0024	2076	1	0	0	0	0	1	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0025	2076	1	1	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	c0026	2076	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B3_chr12_20805705_20921911	0/1	c0001	2109	101	12	28	43	4	13	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	1/0	c0002	2109	80	50	9	17	0	3	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0003	2109	34	1	4	28	0	1	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0004	2109	29	7	1	20	0	1	copy fasta	SLCO1B3	chr12	20805705	20921911