JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP6V1F_chr7_128857856_128870847	0/0	c0004	360	1	0	1	0	0	0	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1G1_chr9_114582769_114603879	1/1	c0001	357	410	89	73	188	16	42	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	c0002	357	8	7	1	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	c0003	357	2	0	0	2	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G2_chr6_31539444_31551608	0/1	c0001	357	432	94	80	197	16	44	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	c0002	357	2	0	2	0	0	0	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	c0003	357	1	0	0	1	0	0	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G3_chr1_198518222_198545680	0/1	c0001	357	388	77	74	178	18	40	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	c0002	357	14	13	1	0	0	0	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	c0003	357	2	2	0	0	0	0	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	c0004	357	1	0	1	0	0	0	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1H_chr8_53710543_53848245	1/1	c0001	1452	281	76	44	129	8	22	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	c0002	1452	1	0	0	1	0	0	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	c0003	1452	1	1	0	0	0	0	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	c0004	1452	1	0	0	0	0	1	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	c0005	1452	1	0	0	0	0	1	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	c0006	1452	1	1	0	0	0	0	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP7A_chrX_77905693_78055395	1/1	c0001	4503	135	33	17	62	5	16	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0002	4503	73	15	13	35	2	8	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0003	4503	5	0	0	5	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0004	4503	5	3	2	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0005	4503	2	0	0	2	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0006	4503	2	2	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0007	4503	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0008	4503	1	0	0	0	0	1	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0009	4503	1	0	1	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0010	4502	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0011	4504	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0012	4503	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0013	4502	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0014	4503	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0015	4503	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0016	4503	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	c0017	4503	1	0	0	0	0	1	copy fasta	ATP7A	chrX	77905693	78055395
ATP7B_chr13_51927669_52016450	1/0	c0001	4398	102	30	24	31	3	13	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0002	4398	76	13	19	30	2	12	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0003	4398	44	29	7	6	1	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0004	4398	12	1	0	11	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0005	4398	11	1	1	4	0	5	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0006	4398	7	1	6	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0007	4398	4	0	0	4	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0008	4398	4	3	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/1	c0009	4398	4	0	0	0	0	3	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0010	4398	4	3	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0011	4398	3	0	0	0	1	2	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0012	4398	3	2	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0013	4398	3	0	0	0	0	3	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0014	4398	2	0	1	0	0	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0015	4398	2	2	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0016	4398	2	1	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450