JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLCO1B3_chr12_20805705_20921911	0/0	c0005	2109	14	1	7	0	2	4	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0006	2109	5	5	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0007	2109	3	3	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0008	2109	2	0	0	0	0	2	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0009	2109	2	2	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0010	2109	1	0	1	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0011	2109	1	0	0	0	0	1	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0012	2109	1	0	0	0	0	1	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0013	2109	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0014	2109	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0015	2109	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0016	2109	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0017	2109	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0018	2109	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0019	2109	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0020	2109	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0021	2109	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0022	2109	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	c0023	2109	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1C1_chr12_20690332_20758386	1/0	c0001	2139	97	50	15	22	1	8	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/1	c0002	2139	95	13	24	43	2	12	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0003	2139	31	16	6	2	1	6	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0004	2139	18	3	2	13	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0005	2139	16	4	2	1	3	6	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0006	2139	9	0	0	7	0	2	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0007	2139	5	0	4	0	1	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0008	2139	4	0	2	0	2	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0009	2139	3	0	0	3	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0010	2139	2	0	2	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0011	2139	2	2	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0012	2139	2	0	1	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0013	2139	2	0	2	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0014	2139	1	1	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0015	2139	1	0	0	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0016	2139	1	0	0	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0017	2139	1	0	0	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0018	2139	1	0	0	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0019	2139	1	0	0	0	0	1	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0020	2139	1	1	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0021	2139	1	0	0	0	0	1	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0022	2139	1	0	1	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	c0023	2139	1	0	1	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO2A1_chr3_133927701_134034925	1/1	c0001	1932	125	21	29	49	5	19	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0002	1932	81	8	7	56	3	7	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0003	1932	54	15	11	17	2	9	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0004	1932	28	3	2	23	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0005	1932	16	15	1	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0006	1932	12	10	2	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0007	1932	6	5	1	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0008	1932	3	2	1	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925