JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLCO2A1_chr3_133927701_134034925	0/0	c0009	1932	2	0	0	2	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0010	1932	2	0	0	2	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0011	1932	2	0	2	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0012	1932	2	0	0	2	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0013	1932	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0014	1932	1	0	0	0	0	1	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0015	1932	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0016	1932	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0017	1932	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0018	1932	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0019	1932	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0020	1932	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	c0021	1932	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2B1_chr11_75146107_75211549	1/1	c0001	2130	166	43	31	45	11	34	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0002	2130	62	8	20	23	4	7	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0003	2130	49	12	6	30	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0004	2121	20	0	3	13	1	3	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0005	2130	11	1	0	9	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0006	2130	11	1	0	10	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0007	2121	9	0	0	8	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0008	2130	9	9	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0009	2130	6	6	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0010	2130	6	6	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0011	2121	5	0	0	5	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0012	2130	4	4	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0013	2121	2	0	0	2	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0014	2130	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0015	2130	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0016	2130	1	0	1	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0017	2130	1	0	0	0	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0018	2130	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0019	2130	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0020	2130	1	0	0	0	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0021	2130	1	0	1	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0022	2130	1	0	0	0	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0023	2130	1	0	0	1	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0024	2130	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	c0025	2130	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO3A1_chr15_91848708_92170903	0/1	c0001	2133	113	52	24	18	7	11	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0002	2133	43	5	19	11	1	7	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	1/0	c0003	2133	12	5	3	0	0	3	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0004	2133	6	1	0	4	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0005	2133	4	3	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0006	2133	3	0	0	3	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0007	2133	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0008	2133	1	0	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0009	2133	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0010	2133	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0011	2133	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0012	2133	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903