JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLCO3A1_chr15_91848708_92170903	0/0	c0013	2133	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0014	2133	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	c0015	2133	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO4A1_chr20_62637503_62677293	1/1	c0001	2169	303	63	49	149	8	32	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0002	2169	49	0	8	30	5	6	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0003	2169	10	1	9	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0004	2169	7	2	5	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0005	2169	6	0	4	2	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0006	2169	5	5	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0007	2169	5	1	0	2	0	2	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0008	2169	5	3	2	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0009	2169	3	0	0	0	0	3	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0010	2169	3	3	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0011	2169	3	3	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0012	2169	3	3	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0013	2169	2	2	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0014	2169	2	2	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0015	2169	1	0	0	0	1	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0016	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0017	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0018	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0019	2169	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0020	2169	1	0	0	0	0	1	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0021	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0022	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0023	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0024	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0025	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0026	2169	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0027	2169	1	0	0	0	0	1	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0028	2169	1	0	0	0	0	1	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0029	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0030	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0031	2205	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0032	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0033	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0034	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0035	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0036	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0037	2169	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0038	2169	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0039	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	c0040	2169	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4C1_chr5_102228986_102301284	1/1	c0001	2175	204	53	35	89	4	21	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0002	2175	70	22	11	28	1	8	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0003	2175	40	1	7	23	3	6	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0004	2175	12	1	0	10	0	1	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0005	2175	9	0	2	3	0	4	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0006	2175	6	1	2	1	2	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0007	2175	4	3	1	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284