JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLCO4C1_chr5_102228986_102301284	0/0	c0008	2175	4	4	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0009	2175	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0010	2175	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0011	2175	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0012	2175	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	c0013	2175	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO5A1_chr8_69662046_69839978	1/1	c0001	2547	138	19	33	60	3	21	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0002	2547	96	39	17	31	3	6	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0003	2547	9	7	0	0	1	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0004	2547	5	1	2	0	0	2	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0005	2547	3	0	0	3	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0006	2547	3	0	1	0	0	2	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0007	2547	3	3	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0008	2547	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0009	2547	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0010	2547	2	1	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0011	2547	2	2	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0012	2547	2	2	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0013	2547	2	2	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0014	2547	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0015	2547	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0016	2547	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0017	2547	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0018	2547	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0019	2547	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0020	2547	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0021	2547	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0022	2547	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0023	2547	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	c0024	2547	1	0	0	0	1	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO6A1_chr5_102366774_102504001	1/0	c0001	2160	153	50	24	57	6	15	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0002	2160	74	1	12	46	2	13	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0003	2160	73	17	12	29	5	10	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0004	2160	22	8	8	3	1	2	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0005	2160	5	4	1	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0006	2160	4	0	0	4	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/1	c0007	2160	4	0	3	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0008	2160	2	2	0	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0009	2160	1	0	0	1	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0010	2160	1	1	0	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0011	2160	1	1	0	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0012	2160	1	0	0	1	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	c0013	2160	1	0	0	1	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLF1_chr5_94613669_94702621	1/1	c0001	3177	245	62	34	115	7	25	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0002	3177	102	15	17	57	4	9	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0003	3177	3	0	1	0	0	2	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0004	3177	2	0	0	0	0	2	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0005	3177	2	2	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0006	3177	2	2	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0007	3177	1	0	1	0	0	0	copy fasta	SLF1	chr5	94613669	94702621