JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLF1_chr5_94613669_94702621	0/0	c0008	3177	1	0	1	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0009	3177	1	1	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0010	3177	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0011	3177	1	0	0	0	1	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0012	3177	1	0	0	0	0	1	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0013	3177	1	0	0	0	0	1	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	c0014	3177	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF2_chr10_100907963_100970134	1/1	c0001	3522	240	62	37	113	7	19	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0002	3522	68	16	21	9	7	15	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0003	3522	4	4	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0004	3522	2	0	2	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0005	3522	2	2	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0006	3522	2	0	2	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0007	3522	2	2	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0008	3522	2	2	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0009	3522	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0010	3522	1	0	0	0	0	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0011	3522	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0012	3522	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0013	3522	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0014	3522	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0015	3522	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	c0016	3522	1	0	0	0	0	1	copy fasta	SLF2	chr10	100907963	100970134
SLFN11_chr17_35345305_35378621	0/0	c0001	2706	116	24	13	64	2	13	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/1	c0002	2706	104	5	12	66	5	15	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0003	2706	51	1	7	36	1	6	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0004	2706	34	12	7	14	0	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0005	2706	22	12	6	2	1	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0006	2706	14	0	8	0	5	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0007	2706	13	1	5	2	0	5	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0008	2706	13	0	8	2	0	3	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0009	2706	11	0	0	11	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0010	2706	9	9	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0011	2706	8	7	0	0	0	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0012	2706	7	0	0	7	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0013	2706	6	6	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0014	2706	6	1	2	2	0	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0015	2706	4	0	0	0	1	3	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0016	2706	4	0	0	4	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	1/0	c0017	2706	3	2	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0018	2706	3	0	0	3	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0019	2706	3	0	0	3	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0020	2706	3	2	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0021	2706	2	2	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0022	2706	2	2	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0023	2706	2	2	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0024	2706	2	0	0	2	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0025	2706	2	0	0	2	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0026	2706	2	0	2	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0027	2706	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621