JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLIT1_chr10_96993038_97190959	0/0	c0001	4605	132	42	17	54	5	14	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0002	4605	23	1	3	13	0	6	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/1	c0003	4605	22	9	5	1	3	3	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0004	4605	18	1	7	8	0	2	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	1/0	c0005	4605	9	6	2	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0006	4605	7	6	1	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0007	4605	6	6	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0008	4605	5	5	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0009	4605	5	1	2	0	0	2	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0010	4605	3	0	0	0	0	3	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0011	4605	2	2	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0012	4605	2	0	0	2	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0013	4605	2	0	0	0	2	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0014	4605	2	0	2	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0015	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0016	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0017	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0018	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0019	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0020	4605	1	0	0	0	0	1	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0021	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0022	4605	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0023	4605	1	0	1	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0024	4605	1	0	0	0	0	1	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0025	4605	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0026	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0027	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0028	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0029	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0030	4605	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0031	4605	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	c0032	4605	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT2_chr4_20246905_20625561	1/1	c0001	4590	118	27	39	26	5	19	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0002	4590	66	23	8	24	4	7	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0003	4590	13	2	10	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0004	4590	4	0	0	1	0	3	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0005	4590	3	3	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0006	4590	3	3	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0007	4590	3	3	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0008	4590	2	0	0	2	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0009	4590	2	0	2	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0010	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0011	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0012	4590	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0013	4590	1	0	1	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0014	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0015	4590	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0016	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0017	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0018	4590	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561