JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP7B_chr13_51927669_52016450	0/0	c0017	4398	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0018	4398	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0019	4398	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0020	4398	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0021	4398	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0022	4398	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0023	4398	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0024	4398	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0025	4398	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0026	4398	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0027	4398	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0028	4398	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0029	4398	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0030	4398	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0031	4398	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0032	4398	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0033	4398	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0034	4398	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	c0035	4398	1	0	0	0	1	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP8A1_chr4_42403373_42662105	1/1	c0001	3495	227	36	55	87	11	36	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0002	3495	37	25	8	2	0	2	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0003	3495	15	10	3	1	1	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0004	3495	14	8	1	3	0	2	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0005	3495	7	6	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0006	3495	5	0	0	5	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0007	3495	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0008	3495	1	0	0	1	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0009	3495	1	0	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0010	3322	1	0	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	c0011	3495	1	0	0	1	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A2_chr13_25366974_26030851	0/0	c0001	3567	38	23	13	0	0	2	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0002	3567	30	17	5	5	0	3	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/1	c0003	3567	18	7	3	7	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0004	3567	8	1	6	0	0	1	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0005	3567	4	3	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0006	3567	3	3	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0007	3567	3	3	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0008	3567	3	3	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0009	3567	2	2	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0010	3567	2	2	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0011	3567	1	0	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0012	3567	1	0	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	1/0	c0013	3567	1	0	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0014	3567	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0015	3567	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0016	3567	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0017	3567	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0018	3567	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0019	3567	1	0	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	c0020	3567	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851