JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLIT2_chr4_20246905_20625561	0/0	c0019	4590	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0020	4590	1	0	0	0	1	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0021	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0022	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0023	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0024	4590	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	c0025	4590	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT3_chr5_168656740_169306139	0/0	c0001	4572	17	6	2	5	0	4	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0002	4572	8	4	1	2	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0003	4572	6	3	1	2	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0004	4572	6	6	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0005	4572	6	3	2	0	1	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0006	4572	5	2	0	3	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0007	4572	4	3	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0008	4572	4	0	1	2	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0009	4572	4	1	0	2	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0010	4572	3	1	1	0	1	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0011	4572	3	2	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0012	4572	3	0	0	3	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0013	4572	3	2	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0014	4572	3	0	1	2	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0015	4572	2	2	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0016	4572	2	0	2	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0017	4572	2	1	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0018	4572	2	1	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0019	4572	2	2	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0020	4572	2	1	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0021	4572	2	0	0	1	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0022	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0023	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0024	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0025	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0026	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0027	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0028	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0029	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0030	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0031	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0032	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0033	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0034	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0035	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0036	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0037	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0038	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0039	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0040	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0041	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0042	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0043	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139