JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLIT3_chr5_168656740_169306139	0/0	c0044	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0045	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0046	4572	1	0	0	0	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0047	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0048	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0049	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0050	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0051	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0052	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0053	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0054	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0055	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0056	4572	1	0	0	0	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0057	4572	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0058	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0059	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0060	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0061	4572	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0062	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0063	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	c0064	4572	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLITRK1_chr13_83872205_83887474	1/0	c0001	2091	385	85	62	187	12	38	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0002	2091	5	0	0	5	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0003	2091	3	0	0	3	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0004	2091	2	2	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0005	2091	2	0	2	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0006	2091	2	2	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/1	c0007	2091	1	0	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0008	2091	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0009	2091	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0010	2091	1	1	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	c0011	2091	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK2_chrX_145812829_145834856	0/1	c0001	2538	191	36	38	88	10	18	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0002	2538	54	0	8	44	0	2	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0003	2538	44	14	5	13	1	11	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0004	2538	11	9	2	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0005	2538	9	8	1	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0006	2538	5	3	0	0	1	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	1/0	c0007	2538	4	1	0	0	1	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0008	2538	2	2	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0009	2530	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0010	2538	1	0	0	0	0	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0011	2538	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0012	2538	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0013	2539	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	c0014	2538	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK3_chr3_165181720_165201384	1/1	c0001	2934	322	87	60	130	13	30	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0002	2934	44	0	3	35	0	6	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0003	2934	36	5	16	10	1	4	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0004	2934	2	0	0	0	0	2	copy fasta	SLITRK3	chr3	165181720	165201384