JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLITRK3_chr3_165181720_165201384	0/0	c0005	2934	2	0	2	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0006	2934	2	0	2	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0007	2934	1	0	1	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0008	2934	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0009	2934	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0010	2934	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0011	2934	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	c0012	2934	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK4_chrX_143617790_143641101	0/1	c0001	2514	272	24	53	149	13	32	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	1/0	c0002	2514	52	47	4	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0003	2514	4	3	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0004	2514	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0005	2514	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0006	2514	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0007	2514	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0008	2518	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0009	2514	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	c0010	2514	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK5_chr13_87666371_87684616	1/1	c0001	2877	379	85	72	164	17	39	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0002	2877	4	0	0	4	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0003	2877	2	2	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0004	2877	1	0	1	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0005	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0006	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0007	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0008	2877	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0009	2877	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0010	2877	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0011	2877	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0012	2877	1	0	0	0	1	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0013	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0014	2877	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0015	2877	1	0	1	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0016	2877	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0017	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0018	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0019	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0020	2877	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0021	2877	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	c0022	2877	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK6_chr13_85787790_85804419	0/1	c0001	2526	223	46	36	109	9	22	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	1/0	c0002	2526	135	10	30	71	4	19	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0003	2526	36	30	2	4	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0004	2526	12	0	0	12	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0005	2526	7	3	4	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0006	2526	3	0	0	3	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0007	2526	2	2	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0008	2526	2	0	0	2	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0009	2526	2	0	2	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0010	2526	1	1	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419