JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLITRK6_chr13_85787790_85804419	0/0	c0011	2526	1	0	1	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0012	2526	1	0	0	1	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0013	2526	1	0	0	0	0	1	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0014	2526	1	0	0	0	0	1	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0015	2526	1	0	0	1	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0016	2526	1	0	1	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0017	2526	1	0	0	0	0	1	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0018	2526	1	0	0	0	1	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	c0019	2526	1	0	0	1	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLK_chr10_103962140_104034233	1/1	c0001	3708	193	46	25	91	10	19	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0002	3708	74	34	7	31	0	2	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0003	3708	66	6	15	34	3	8	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0004	3708	7	0	5	0	1	1	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0005	3708	6	5	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0006	3708	4	0	4	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0007	3708	4	1	2	0	1	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0008	3708	3	0	0	0	0	3	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0009	3708	2	0	0	2	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0010	3708	2	0	0	0	0	2	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0011	3708	2	2	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0012	3708	2	0	0	0	0	2	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0013	3708	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0014	3708	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0015	3708	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0016	3708	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0017	3708	1	0	0	0	1	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0018	3708	1	0	0	0	0	1	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0019	3708	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0020	3708	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0021	3708	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0022	3708	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	c0023	3708	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLMAP_chr3_57751309_57935003	1/1	c0001	2529	200	66	40	62	5	25	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0002	2529	95	8	17	57	4	9	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0003	2529	4	0	0	4	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0004	2529	2	1	0	0	1	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0005	2529	2	0	0	2	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0006	2529	2	0	0	2	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0007	2529	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0008	2529	1	0	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0009	2529	1	1	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0010	2529	1	0	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	c0011	2529	1	0	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLN_chr11_107702378_107717056	1/1	c0001	96	410	94	70	190	14	40	copy fasta	SLN	chr11	107702378	107717056
SLPI_chr20_45247239_45259564	1/1	c0001	399	395	95	78	168	10	42	copy fasta	SLPI	chr20	45247239	45259564
SLPI_chr20_45247239_45259564	0/0	c0002	399	2	0	2	0	0	0	copy fasta	SLPI	chr20	45247239	45259564
SLPI_chr20_45247239_45259564	0/0	c0003	399	1	1	0	0	0	0	copy fasta	SLPI	chr20	45247239	45259564
SLTM_chr15_58874050_58938679	1/1	c0001	3105	359	86	58	164	16	33	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	c0002	3105	17	4	6	2	2	3	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	c0003	3105	3	0	2	0	0	1	copy fasta	SLTM	chr15	58874050	58938679