JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLX4_chr16_3576181_3616606	0/0	c0008	5505	6	6	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0009	5505	6	0	5	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0010	5505	5	0	0	5	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0011	5505	3	3	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0012	5505	3	0	0	3	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0013	5505	3	2	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0014	5506	3	0	1	1	1	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0015	5502	3	0	0	3	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0016	5505	3	2	1	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0017	5505	3	2	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0018	5505	3	3	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0019	5505	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0020	5505	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0021	5505	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0022	5505	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0023	5505	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0024	5505	2	0	2	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0025	5505	2	0	0	0	0	2	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0026	5505	2	0	0	2	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0027	5505	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0028	5505	2	0	0	2	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0029	5505	1	0	1	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0030	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0031	5505	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0032	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0033	5506	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0034	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0035	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0036	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0037	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0038	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0039	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0040	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0041	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0042	5506	1	0	1	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0043	5506	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0044	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0045	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0046	5518	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0047	5503	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0048	5506	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0049	5505	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0050	5505	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0051	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0052	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0053	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0054	5505	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0055	5505	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0056	5506	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0057	5505	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606