JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLX4_chr16_3576181_3616606	0/0	c0058	5506	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0059	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0060	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0061	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0062	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0063	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0064	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0065	5506	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0066	5505	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0067	5505	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0068	5505	1	0	0	0	1	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0069	5505	1	0	1	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX9_chr21_44935029_44981973	1/1	c0001	693	271	37	49	128	17	38	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	c0002	693	26	3	1	20	1	1	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	c0003	693	20	13	6	0	0	1	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	c0004	693	13	2	8	2	0	1	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	c0005	693	2	0	2	0	0	0	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	c0006	693	1	1	0	0	0	0	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	c0007	648	1	0	0	0	0	1	copy fasta	SLX9	chr21	44935029	44981973
SMAD1_chr4_145476853_145564176	1/1	c0001	1398	301	84	56	111	12	36	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	c0002	1398	4	4	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	c0003	1398	2	2	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	c0004	1398	1	0	0	1	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD2_chr18_47803957_47935659	1/1	c0001	1404	302	69	60	136	10	25	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	c0002	1404	8	7	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD3_chr15_67060602_67200169	0/1	c0001	1278	256	77	52	84	9	33	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	1/0	c0002	1278	52	11	6	24	1	9	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	c0003	1278	2	0	2	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD4_chr18_51025213_51090042	1/1	c0001	1659	296	75	65	120	8	26	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	c0002	1659	3	3	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	c0003	1659	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	c0004	1659	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	c0005	1659	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD5_chr5_136127845_136187733	1/1	c0001	1398	291	80	43	132	14	20	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	c0002	1398	2	0	2	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	c0003	1398	1	0	1	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD6_chr15_66697236_66787849	1/1	c0001	1491	272	78	52	91	15	34	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0002	1491	22	0	0	21	0	1	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0003	1491	14	0	0	13	0	1	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0004	1491	4	0	0	4	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0005	1491	3	0	0	3	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0006	1491	3	0	3	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0007	1491	3	0	2	0	1	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0008	1491	2	0	0	2	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0009	1491	2	0	1	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0010	1502	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0011	1491	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0012	1491	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0013	1491	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0014	1491	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849