JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMAD6_chr15_66697236_66787849	0/0	c0015	1491	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0016	1491	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0017	1491	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0018	1491	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0019	1491	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	c0020	1491	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD7_chr18_48914853_48955965	1/1	c0001	1281	362	91	66	141	18	44	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0002	1281	19	1	4	13	0	1	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0003	1281	4	0	0	4	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0004	1281	2	0	2	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0005	1281	2	0	1	0	0	1	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0006	1281	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0007	1281	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0008	1281	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0009	1281	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0010	1281	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0011	1281	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0012	1281	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0013	1281	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	c0014	1281	1	0	1	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD9_chr13_36839831_36925238	1/1	c0001	1404	347	80	65	152	6	42	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	c0002	1404	3	0	0	3	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	c0003	1404	2	0	1	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	c0004	1404	2	1	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	c0005	1404	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	c0006	1404	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	c0007	1404	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	c0008	1404	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAGP_chr12_51239558_51275415	1/1	c0001	294	379	94	74	158	14	37	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	c0002	294	30	6	0	21	0	3	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	c0003	294	1	0	0	1	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAP1_chr6_70662883_70867003	1/1	c0001	1404	216	51	44	75	11	33	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	c0002	1404	85	23	8	51	1	2	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	c0003	1404	1	0	0	0	0	1	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	c0004	1404	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	c0005	1404	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	c0006	1404	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	c0007	1404	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP2_chr1_40368727_40428322	0/1	c0001	1290	363	79	53	183	12	35	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	1/0	c0002	1290	18	0	4	5	4	4	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	c0003	1290	10	8	2	0	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	c0004	1290	4	4	0	0	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	c0005	1290	3	1	1	0	0	1	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	c0006	1290	2	0	0	2	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMARCA1_chrX_129441506_129528490	1/1	c0001	3213	270	65	45	132	4	22	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	c0002	3213	2	2	0	0	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	c0003	3214	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	c0004	3212	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	c0005	3213	1	1	0	0	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	c0006	3214	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490