JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMARCA1_chrX_129441506_129528490	0/0	c0007	3210	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	c0008	3213	1	0	1	0	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	c0009	3213	1	0	0	0	1	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA2_chr9_2010347_2198620	1/0	c0001	4773	75	4	20	39	4	7	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0002	4770	37	0	4	30	1	2	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0003	4773	23	15	2	3	2	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0004	4770	18	0	1	16	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0005	4770	16	13	2	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/1	c0006	4773	15	1	7	4	1	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0007	4773	11	9	1	0	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0008	4773	11	1	2	3	3	2	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0009	4773	8	0	1	7	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0010	4770	8	3	1	2	0	2	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0011	4770	5	0	1	3	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0012	4773	5	1	2	2	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0013	4773	4	0	2	1	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0014	4770	4	3	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0015	4782	4	2	0	0	0	2	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0016	4773	3	3	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0017	4770	3	3	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0018	4774	3	1	1	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0019	4774	3	0	3	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0020	4776	3	2	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0021	4776	3	0	2	0	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0022	4773	3	0	2	0	1	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0023	4770	2	2	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0024	4770	2	0	0	2	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0025	4773	2	0	1	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0026	4770	2	2	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0027	4770	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0028	4774	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0029	4773	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0030	4773	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0031	4776	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0032	4779	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0033	4770	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0034	4770	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0035	4770	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0036	4770	1	0	0	0	1	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0037	4773	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0038	4773	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0039	4773	1	0	0	0	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0040	4773	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0041	4773	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0042	4773	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0043	4773	1	0	0	0	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0044	4755	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0045	4755	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0046	4770	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0047	4770	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620