JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMARCA2_chr9_2010347_2198620	0/0	c0048	4770	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0049	4770	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0050	4770	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0051	4773	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0052	4774	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0053	4773	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0054	4773	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0055	4773	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0056	4773	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0057	4773	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0058	4773	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0059	4776	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0060	4776	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0061	4777	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0062	4779	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0063	4779	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0064	4782	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0065	4770	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0066	4773	1	0	0	0	1	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0067	4773	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0068	4773	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	c0069	4773	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA4_chr19_10956030_11067273	1/1	c0001	4944	145	25	27	73	4	14	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0002	4944	39	5	7	25	0	2	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0003	4944	31	2	7	9	4	9	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0004	4944	18	14	0	3	0	1	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0005	4944	5	5	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0006	4944	4	4	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0007	4944	4	0	1	2	0	1	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0008	4944	3	3	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0009	4944	3	3	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0010	4944	3	0	3	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0011	4944	3	0	0	0	0	3	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0012	4944	2	0	0	0	0	2	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0013	4944	2	0	1	0	1	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0014	4944	2	0	1	0	1	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0015	4944	2	0	0	0	0	2	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0016	4944	2	2	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0017	4944	2	1	1	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0018	4944	2	0	0	2	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0019	4944	1	0	0	1	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0020	4944	1	0	0	0	0	1	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0021	4944	1	1	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0022	4944	1	0	0	1	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0023	4944	1	1	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0024	4944	1	0	0	0	0	1	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0025	4944	1	1	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0026	4944	1	1	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0027	4944	1	0	0	0	0	1	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	c0028	4944	1	1	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273