JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP8A2_chr13_25366974_26030851	0/0	c0021	3567	1	0	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8B1_chr18_57641426_57808315	0/1	c0001	3756	278	72	60	98	16	31	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0002	3756	10	0	0	10	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0003	3756	7	0	2	1	0	4	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0004	3756	3	3	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0005	3756	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0006	3756	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0007	3756	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0008	3756	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0009	3756	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0010	3756	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0011	3756	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0012	3756	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0013	3756	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0014	3756	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0015	3756	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0016	3756	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	1/0	c0017	3756	1	0	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0018	3756	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0019	3756	1	0	0	0	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	c0020	3756	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B2_chr1_154320525_154356304	0/1	c0001	3573	124	10	31	68	3	11	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	1/0	c0002	3573	85	33	17	23	4	7	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0003	3573	66	18	8	30	4	6	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0004	3573	50	11	8	19	1	11	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0005	3573	13	0	5	6	0	2	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0006	3573	7	5	2	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0007	3573	5	5	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0008	3573	5	0	0	5	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0009	3573	4	4	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0010	3573	3	3	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0011	3573	2	0	0	0	0	2	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0012	3573	2	0	0	2	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0013	3573	2	2	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0014	3573	2	0	0	2	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0015	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0016	3573	1	1	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0017	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0018	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0019	3573	1	0	1	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0020	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0021	3573	1	0	0	0	0	1	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0022	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0023	3585	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0024	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0025	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	c0026	3573	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B3_chr19_1777075_1817276	0/0	c0001	3903	42	8	16	7	1	10	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0002	3903	30	2	8	17	1	2	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/1	c0003	3903	26	10	3	7	0	5	copy fasta	ATP8B3	chr19	1777075	1817276