JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMC4_chr3_160394650_160439953	0/0	c0004	3867	5	0	0	5	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0005	3867	3	3	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0006	3867	3	3	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0007	3867	2	2	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0008	3867	2	2	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0009	3867	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0010	3867	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0011	3867	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0012	3867	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0013	3867	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0014	3867	1	0	0	0	0	1	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0015	3867	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0016	3867	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0017	3867	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0018	3867	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0019	3867	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0020	3867	1	0	0	0	0	1	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0021	3867	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0022	3867	1	0	0	0	0	1	copy fasta	SMC4	chr3	160394650	160439953
SMC5_chr9_70253978_70359873	0/0	c0001	3306	148	32	39	61	4	12	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0002	3306	86	2	11	56	1	16	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	1/1	c0003	3306	68	20	8	29	3	6	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0004	3306	20	7	8	2	1	2	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0005	3306	7	6	1	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0006	3306	6	6	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0007	3306	6	5	1	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0008	3306	5	2	2	0	1	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0009	3306	3	3	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0010	3306	3	0	0	3	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0011	3306	2	2	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0012	3306	2	0	0	0	0	2	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0013	3306	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0014	3306	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0015	3306	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0016	3306	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0017	3306	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0018	3306	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0019	3306	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0020	3306	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0021	3306	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	c0022	3306	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC6_chr2_17658812_17758810	1/0	c0001	3276	190	51	41	68	9	20	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/1	c0002	3276	28	6	12	4	3	2	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	c0003	3276	26	19	3	0	2	2	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	c0004	3276	6	5	1	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	c0005	3276	1	1	0	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	c0006	3276	1	0	1	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	c0007	3276	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	c0008	3276	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMCHD1_chr18_2650726_2810017	0/1	c0001	6018	70	19	8	29	4	9	copy fasta	SMCHD1	chr18	2650726	2810017