JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMCHD1_chr18_2650726_2810017	0/0	c0002	6018	62	11	21	14	4	12	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0003	6018	48	2	13	27	4	2	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0004	6018	43	6	7	26	0	4	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0005	6018	29	20	7	2	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0006	6018	13	0	0	13	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0007	6018	11	9	2	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0008	6018	10	9	1	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0009	6018	7	0	1	5	1	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	1/0	c0010	6018	7	0	0	6	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0011	6018	5	0	3	1	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0012	6018	4	3	1	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0013	6018	4	1	1	1	1	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0014	6018	4	0	0	4	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0015	6018	3	3	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0016	6018	3	3	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0017	6018	2	0	0	2	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0018	6018	2	0	0	2	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0019	6018	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0020	6018	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0021	6018	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0022	6018	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0023	6018	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0024	6018	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0025	6018	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0026	6018	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0027	6018	1	0	0	0	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0028	6018	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0029	6018	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0030	6018	1	0	0	0	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	c0031	6018	1	0	1	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCO1_chr3_196501879_196520346	1/1	c0001	645	318	28	70	161	18	39	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0002	645	23	23	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0003	645	17	15	2	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0004	645	12	8	1	3	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0005	645	9	0	0	4	0	5	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0006	645	5	5	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0007	645	4	3	1	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0008	645	4	4	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0009	645	2	0	0	0	0	2	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0010	645	2	2	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0011	645	1	0	0	0	0	1	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	c0012	645	1	0	0	0	0	1	copy fasta	SMCO1	chr3	196501879	196520346
SMCO2_chr12_27441736_27507185	0/1	c0001	1032	144	25	27	66	6	19	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0002	1032	67	2	4	48	0	13	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0003	1032	47	5	2	35	1	4	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0004	1032	22	6	9	1	2	4	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0005	1032	18	16	2	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0006	657	13	10	2	0	1	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0007	1032	9	8	1	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	1/0	c0008	1032	9	0	4	0	4	0	copy fasta	SMCO2	chr12	27441736	27507185