JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMG5_chr1_156244224_156287825	0/0	c0014	3051	1	0	0	0	0	1	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0015	3051	1	1	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG6_chr17_2054843_2308785	0/0	c0001	4260	75	10	13	36	1	15	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0002	4260	65	14	9	23	4	15	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/1	c0003	4260	52	1	23	16	2	9	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0004	4260	18	17	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0005	4260	12	0	0	7	1	4	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0006	4260	11	11	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0007	4260	8	8	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0008	4260	3	1	2	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0009	4260	3	1	1	0	1	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0010	4260	3	0	0	3	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0011	4260	3	3	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0012	4260	2	0	0	0	1	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0013	4260	2	0	2	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0014	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0015	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0016	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0017	4260	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0018	4260	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0019	4260	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0020	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0021	4260	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0022	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0023	4260	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0024	4260	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0025	4260	1	0	0	0	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0026	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0027	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	1/0	c0028	4260	1	0	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0029	4260	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0030	4260	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0031	4260	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0032	4260	1	0	0	0	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0033	4260	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	c0034	4260	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG7_chr1_183467499_183559191	0/1	c0001	3564	212	57	37	92	6	19	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0002	3564	69	20	15	25	4	5	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0003	3564	44	0	4	38	0	2	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	1/0	c0004	3564	14	2	5	0	4	2	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0005	3567	8	8	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0006	3564	3	0	0	3	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0007	3564	2	1	1	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0008	3564	2	0	2	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0009	3564	1	1	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0010	3564	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0011	3564	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0012	3564	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0013	3564	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	c0014	3564	1	1	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191