JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMG8_chr17_59205035_59220230	0/0	c0001	2976	171	35	24	81	9	22	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	1/1	c0002	2976	139	6	26	92	4	9	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0003	2976	47	21	16	0	3	7	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0004	2976	16	15	1	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0005	2976	12	10	2	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0006	2976	2	2	0	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0007	2976	1	0	1	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0008	2976	1	0	0	1	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0009	2976	1	0	0	1	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0010	2976	1	0	1	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0011	2976	1	0	1	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0012	2976	1	1	0	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	c0013	2976	1	0	0	1	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG9_chr19_43722983_43759962	1/1	c0001	1563	304	86	52	120	12	32	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	c0002	1563	7	7	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	c0003	1563	3	1	2	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	c0004	1563	2	0	0	2	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	c0005	1563	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	c0006	1563	1	0	0	0	0	1	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	c0007	1563	1	0	0	0	0	1	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	c0008	1563	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMIM10L1_chr12_11166194_11181016	0/0	c0001	207	218	23	38	124	7	26	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/1	c0002	207	175	67	35	51	6	15	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	c0003	207	3	0	1	0	1	1	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	c0004	207	1	0	0	1	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L2A_chrX_135416944_135433075	1/1	c0001	237	301	78	43	141	9	28	copy fasta	SMIM10L2A	chrX	135416944	135433075
SMIM10L2B_chrX_135089985_135103712	1/1	c0001	237	302	68	58	134	9	31	copy fasta	SMIM10L2B	chrX	135089985	135103712
SMIM10L2B_chrX_135089985_135103712	0/0	c0002	237	1	0	1	0	0	0	copy fasta	SMIM10L2B	chrX	135089985	135103712
SMIM10_chrX_134985991_134997473	1/1	c0001	252	321	74	53	149	13	30	copy fasta	SMIM10	chrX	134985991	134997473
SMIM10_chrX_134985991_134997473	0/0	c0002	252	1	0	0	0	0	1	copy fasta	SMIM10	chrX	134985991	134997473
SMIM11_chr21_34370507_34394151	0/1	c0001	177	125	33	35	30	6	20	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	c0002	177	3	2	1	0	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	c0003	177	1	1	0	0	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM12_chr1_34845362_34864749	1/1	c0001	279	381	100	80	139	16	44	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	c0002	279	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM13_chr6_11088834_11143733	1/1	c0001	276	399	90	70	176	16	45	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	c0002	276	1	0	0	0	0	1	copy fasta	SMIM13	chr6	11088834	11143733
SMIM14_chr4_39541336_39643865	1/1	c0001	300	344	78	66	146	8	44	copy fasta	SMIM14	chr4	39541336	39643865
SMIM15_chr5_61152704_61167468	1/1	c0001	225	358	88	64	148	16	40	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	c0002	225	5	5	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	c0003	225	2	2	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	c0004	225	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM17_chr19_56638159_56662247	1/1	c0001	357	403	85	80	177	18	41	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	c0002	357	13	12	0	0	0	1	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	c0003	357	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	c0004	357	1	0	0	1	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM18_chr8_30633580_30651064	1/1	c0001	288	428	96	76	195	14	45	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	c0002	288	1	0	0	0	0	1	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	c0003	288	1	0	0	1	0	0	copy fasta	SMIM18	chr8	30633580	30651064
SMIM19_chr8_42536585_42560195	1/1	c0001	324	384	94	68	172	12	36	copy fasta	SMIM19	chr8	42536585	42560195