JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMIM1_chr1_3767749_3780956	1/1	c0001	237	420	90	84	176	18	50	copy fasta	SMIM1	chr1	3767749	3780956
SMIM20_chr4_25909220_25934812	1/1	c0001	204	417	97	71	187	16	44	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	c0002	204	18	0	7	11	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	c0003	204	2	0	0	2	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	c0004	204	1	1	0	0	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM21_chr18_75404476_75432703	1/1	c0001	306	429	92	76	197	16	46	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	c0002	306	2	2	0	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	c0003	306	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM22_chr16_4790369_4801491	1/1	c0001	267	392	81	72	176	18	43	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	c0002	267	5	5	0	0	0	0	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	c0003	267	2	0	0	0	0	2	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	c0004	282	2	2	0	0	0	0	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	c0005	267	1	0	0	0	0	1	copy fasta	SMIM22	chr16	4790369	4801491
SMIM23_chr5_171780817_171796136	1/1	c0001	519	412	74	84	190	16	46	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	c0002	519	15	13	2	0	0	0	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	c0003	519	1	1	0	0	0	0	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	c0004	519	1	0	0	1	0	0	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	c0005	519	1	0	0	1	0	0	copy fasta	SMIM23	chr5	171780817	171796136
SMIM24_chr19_3468986_3485525	1/0	c0001	393	411	92	75	186	11	46	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	c0002	393	6	6	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/1	c0003	393	2	0	0	0	1	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	c0004	393	2	0	0	0	0	2	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	c0005	393	1	0	1	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM26_chr20_18562432_18574560	1/1	c0001	288	427	81	84	198	16	46	copy fasta	SMIM26	chr20	18562432	18574560
SMIM26_chr20_18562432_18574560	0/0	c0002	288	13	13	0	0	0	0	copy fasta	SMIM26	chr20	18562432	18574560
SMIM27_chr9_32547327_32558007	1/1	c0001	168	371	90	66	161	14	38	copy fasta	SMIM27	chr9	32547327	32558007
SMIM27_chr9_32547327_32558007	0/0	c0002	168	12	2	8	0	2	0	copy fasta	SMIM27	chr9	32547327	32558007
SMIM27_chr9_32547327_32558007	0/0	c0003	168	2	2	0	0	0	0	copy fasta	SMIM27	chr9	32547327	32558007
SMIM27_chr9_32547327_32558007	0/0	c0004	168	1	0	0	1	0	0	copy fasta	SMIM27	chr9	32547327	32558007
SMIM28_chr6_138372905_138388486	1/1	c0001	459	287	55	57	125	14	34	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0002	459	65	34	2	28	1	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0003	459	11	1	5	0	1	4	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0004	459	5	0	0	5	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0005	459	2	1	0	0	0	1	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0006	459	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0007	459	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0008	459	1	0	0	0	0	1	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	c0009	459	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM29_chr6_34241395_34254006	1/1	c0001	309	353	94	74	132	13	38	copy fasta	SMIM29	chr6	34241395	34254006
SMIM29_chr6_34241395_34254006	0/0	c0002	309	1	0	0	0	1	0	copy fasta	SMIM29	chr6	34241395	34254006
SMIM2_chr13_44138150_44166257	1/1	c0001	258	378	94	64	156	16	46	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	c0002	258	1	1	0	0	0	0	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	c0003	258	1	1	0	0	0	0	copy fasta	SMIM2	chr13	44138150	44166257
SMIM30_chr7_113111718_113123554	1/1	c0001	180	336	88	72	116	14	44	copy fasta	SMIM30	chr7	113111718	113123554
SMIM31_chr4_164749131_164808795	1/1	c0001	216	343	79	61	157	13	31	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	c0002	216	18	8	3	4	0	3	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	c0003	216	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	c0004	216	1	0	0	1	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	c0005	216	1	0	0	0	1	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM32_chr5_136186468_136198162	1/1	c0001	312	233	31	39	119	10	32	copy fasta	SMIM32	chr5	136186468	136198162