JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMIM32_chr5_136186468_136198162	0/0	c0002	312	172	59	23	74	8	8	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	c0003	312	3	0	0	3	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM33_chr5_139466004_139478700	1/0	c0001	399	278	91	35	130	8	13	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/1	c0002	399	133	7	39	58	8	20	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	c0003	399	3	0	0	3	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	c0004	399	1	0	0	1	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	c0005	399	1	0	0	0	0	1	copy fasta	SMIM33	chr5	139466004	139478700
SMIM35_chr11_117998634_118091963	1/1	c0001	258	275	65	64	96	14	34	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	c0002	258	118	18	6	82	4	8	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	c0003	258	8	8	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	c0004	258	3	3	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	c0005	258	2	0	1	0	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	c0006	258	2	0	1	0	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM36_chr17_55444856_55516452	1/1	c0001	282	333	70	67	136	14	44	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	c0002	285	4	4	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	c0003	282	2	2	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	c0004	282	1	0	1	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM38_chr11_69150935_69167440	1/1	c0001	156	438	96	78	208	16	38	copy fasta	SMIM38	chr11	69150935	69167440
SMIM39_chr2_131030092_131040262	1/1	c0001	171	346	99	61	128	14	42	copy fasta	SMIM39	chr2	131030092	131040262
SMIM39_chr2_131030092_131040262	0/0	c0002	171	2	1	1	0	0	0	copy fasta	SMIM39	chr2	131030092	131040262
SMIM3_chr5_150773757_150801734	1/1	c0001	183	388	96	77	164	12	37	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	c0002	183	15	0	0	8	0	7	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	c0003	183	1	0	0	1	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	c0004	183	1	0	1	0	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	c0005	183	1	0	0	1	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM40_chr6_33318628_33334279	0/1	c0001	240	380	98	69	158	14	40	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	c0002	240	2	2	0	0	0	0	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	c0003	240	1	0	1	0	0	0	copy fasta	SMIM40	chr6	33318628	33334279
SMIM41_chr12_52074704_52113255	1/1	c0001	282	333	85	57	143	10	36	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0002	282	31	9	3	16	0	3	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0003	282	10	0	3	0	4	3	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0004	282	2	0	0	0	0	2	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0005	282	2	2	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0006	282	1	0	1	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0007	282	1	0	1	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0008	282	1	0	0	1	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	c0009	282	1	0	1	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM42_chr1_158122287_158133301	1/1	c0001	213	403	98	70	171	16	46	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	c0002	213	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	c0003	213	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	c0004	213	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM43_chr4_121753930_121770164	1/1	c0001	192	438	96	80	204	14	42	copy fasta	SMIM43	chr4	121753930	121770164
SMIM44_chr19_3477110_3488441	1/1	c0001	450	388	90	77	163	12	44	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	c0002	450	6	6	0	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	c0003	450	2	0	0	2	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	c0004	450	2	0	1	1	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	c0005	450	1	1	0	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	c0006	450	1	1	0	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM45_chr22_41947150_41963939	1/1	c0001	207	382	92	76	154	16	42	copy fasta	SMIM45	chr22	41947150	41963939
SMIM46_chr19_14107324_14117476	1/1	c0001	153	366	89	74	145	16	40	copy fasta	SMIM46	chr19	14107324	14117476