JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMIM46_chr19_14107324_14117476	0/0	c0002	153	1	0	0	1	0	0	copy fasta	SMIM46	chr19	14107324	14117476
SMIM46_chr19_14107324_14117476	0/0	c0003	98	1	1	0	0	0	0	copy fasta	SMIM46	chr19	14107324	14117476
SMIM47_chr19_50780728_50791160	1/1	c0001	87	351	90	78	125	12	44	copy fasta	SMIM47	chr19	50780728	50791160
SMIM47_chr19_50780728_50791160	0/0	c0002	87	1	0	0	1	0	0	copy fasta	SMIM47	chr19	50780728	50791160
SMIM5_chr17_75628434_75646404	1/1	c0001	234	407	94	74	173	14	50	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	c0002	234	2	2	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	c0003	234	2	2	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	c0004	234	1	0	0	1	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM6_chr17_75641251_75652974	1/1	c0001	189	410	96	70	180	14	48	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	c0002	189	6	0	0	6	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM7_chr19_16641148_16665144	1/1	c0001	228	359	94	72	139	14	38	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	c0002	228	1	0	0	1	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM8_chr6_87317588_87347329	1/0	c0001	294	355	68	61	168	15	42	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/1	c0002	294	49	9	7	27	1	4	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	c0003	294	12	12	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	c0004	294	2	2	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	c0005	294	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	c0006	294	1	0	0	1	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM9_chrX_154818348_154839662	1/1	c0001	300	269	45	56	125	11	30	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	0/0	c0002	300	31	29	2	0	0	0	copy fasta	SMIM9	chrX	154818348	154839662
SMKR1_chr7_129497531_129517918	1/1	c0001	198	410	85	82	175	17	49	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	c0002	195	5	5	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	c0003	198	3	3	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	c0004	198	1	0	0	1	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	c0005	168	1	0	0	0	0	1	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	c0006	198	1	1	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	c0007	198	1	0	0	0	1	0	copy fasta	SMKR1	chr7	129497531	129517918
SMLR1_chr6_130822406_130842135	0/0	c0001	324	234	45	26	134	4	25	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	1/1	c0002	324	198	45	56	64	12	19	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	c0003	324	4	0	0	0	0	4	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	c0004	324	3	3	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	c0005	324	1	1	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMN1_chr5_70920087_70958015	0/0	c0001	885	31	29	1	1	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN1_chr5_70920087_70958015	0/0	c0002	885	4	0	3	1	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN1_chr5_70920087_70958015	0/0	c0003	885	1	1	0	0	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN2_chr5_70044669_70082595	0/0	c0001	885	67	10	8	33	2	14	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0002	885	15	1	3	5	0	6	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0003	885	14	4	3	4	1	2	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0004	885	4	0	2	0	0	2	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0005	834	3	0	3	0	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0006	885	1	1	0	0	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0007	885	1	0	0	1	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0008	885	1	0	0	1	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0009	885	1	0	1	0	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	c0010	885	1	0	0	0	1	0	copy fasta	SMN2	chr5	70044669	70082595
SMNDC1_chr10_110285730_110309920	1/1	c0001	717	379	88	60	178	14	37	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	c0002	717	9	0	5	0	0	4	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	c0003	717	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	c0004	717	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	c0005	717	1	0	0	0	0	1	copy fasta	SMNDC1	chr10	110285730	110309920