JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMNDC1_chr10_110285730_110309920	0/0	c0006	717	1	0	1	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMOC1_chr14_69874416_70037366	1/1	c0001	1308	205	80	45	45	11	22	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0002	1308	37	0	8	23	2	4	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0003	1308	8	0	0	7	0	1	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0004	1308	5	2	1	0	1	1	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0005	1308	4	4	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0006	1308	3	1	2	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0007	1308	2	2	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0008	1308	1	0	0	1	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0009	1308	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0010	1308	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0011	1308	1	0	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0012	1308	1	0	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	c0013	1308	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC2_chr6_168436184_168672992	1/1	c0001	1341	100	19	15	40	7	17	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0002	1341	63	21	11	24	1	6	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0003	1341	4	0	3	1	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0004	1341	3	2	1	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0005	1341	2	2	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0006	1341	1	0	0	1	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0007	1341	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0008	1341	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0009	1341	1	0	0	0	0	1	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0010	1341	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0011	1341	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0012	1341	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	c0013	1341	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOX_chr20_4143828_4192727	0/1	c0001	1668	164	29	43	64	6	21	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	1/0	c0002	1668	113	17	10	64	5	16	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0003	1668	100	30	11	56	1	2	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0004	1668	12	0	3	2	3	4	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0005	1668	10	0	3	3	2	2	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0006	1668	7	7	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0007	1668	6	5	1	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0008	1668	4	4	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0009	1668	3	0	1	0	1	1	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0010	1668	2	0	0	0	0	2	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0011	1668	1	0	0	0	0	1	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0012	1668	1	0	0	1	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0013	1668	1	1	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0014	1668	1	0	0	0	0	1	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0015	1668	1	1	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0016	1668	1	1	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	c0017	1668	1	1	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMO_chr7_129183633_129218545	0/1	c0001	2364	247	49	51	111	8	27	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	1/0	c0002	2364	91	23	13	40	2	12	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0003	2364	25	15	5	0	1	4	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0004	2364	15	0	0	15	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0005	2364	6	0	2	3	0	1	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0006	2364	6	4	2	0	0	0	copy fasta	SMO	chr7	129183633	129218545