JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMO_chr7_129183633_129218545	0/0	c0007	2364	2	0	1	0	1	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0008	2364	2	0	0	2	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0009	2364	1	0	1	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0010	2364	1	0	0	0	0	1	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0011	2364	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0012	2364	1	0	1	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0013	2364	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0014	2364	1	0	0	0	1	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0015	2364	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0016	2364	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0017	2364	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0018	2364	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0019	2364	1	0	0	0	0	1	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0020	2364	1	0	0	0	1	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0021	2364	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0022	2364	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0023	2364	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	c0024	2364	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMPD1_chr11_6385474_6399996	0/1	c0001	1896	196	18	41	102	8	26	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0002	1890	65	14	18	26	0	7	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	1/0	c0003	1896	21	20	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0004	1884	19	1	0	13	2	3	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0005	1890	14	1	7	0	3	3	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0006	1890	11	4	4	0	2	1	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0007	1890	11	8	3	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0008	1896	6	0	3	2	1	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0009	1902	5	0	2	0	0	3	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0010	1896	5	5	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0011	1890	5	4	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0012	1890	5	5	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0013	1878	5	4	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0014	1896	3	3	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0015	1908	2	1	0	1	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0016	1896	2	0	0	0	0	2	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0017	1896	2	0	2	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0018	1884	2	0	0	0	0	2	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0019	1896	2	2	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0020	1890	1	1	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0021	1896	1	0	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0022	1872	1	0	0	0	0	1	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0023	1896	1	1	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0024	1890	1	1	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0025	1890	1	0	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	c0026	1890	1	1	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD2_chr6_109435724_109448919	1/1	c0001	1272	172	20	41	84	7	18	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	c0002	1272	127	49	16	43	5	14	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	c0003	1272	71	3	9	47	1	11	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	c0004	1272	48	8	11	23	3	3	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	c0005	1269	13	12	1	0	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	c0006	1272	4	0	0	4	0	0	copy fasta	SMPD2	chr6	109435724	109448919