JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMPD2_chr6_109435724_109448919	0/0	c0007	1272	1	0	0	1	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	c0008	1272	1	0	0	1	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	c0009	1252	1	0	0	1	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD3_chr16_68353327_68453508	0/1	c0001	1968	102	38	23	22	6	12	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	1/0	c0002	1968	81	33	16	19	2	10	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0003	1968	4	1	3	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0004	1968	3	0	0	3	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0005	1968	3	0	0	2	0	1	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0006	1968	3	3	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0007	1968	2	2	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0008	1968	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0009	1968	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0010	1968	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0011	1968	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0012	1968	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0013	1968	1	0	0	0	0	1	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0014	1968	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0015	1968	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0016	1968	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	c0017	1968	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD4_chr2_130146408_130186602	1/1	c0001	2484	171	51	28	61	5	24	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0002	2484	117	20	25	54	7	11	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0003	2484	11	9	2	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0004	2484	5	0	5	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0005	2484	4	0	0	4	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0006	2484	4	3	1	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0007	2484	4	4	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0008	2484	2	0	0	2	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0009	2484	2	2	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0010	2484	2	2	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0011	2484	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0012	2484	1	0	0	1	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0013	2484	1	0	0	1	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0014	2484	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0015	2484	1	0	0	1	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0016	2484	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0017	2484	1	0	0	0	0	1	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0018	2484	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0019	2484	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	c0020	2484	1	0	1	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPDL3A_chr6_122784258_122814720	1/1	c0001	1362	341	67	61	180	11	20	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0002	1362	32	3	5	4	3	17	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0003	1362	16	0	3	7	1	5	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0004	1362	14	0	11	2	0	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0005	1362	8	7	1	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0006	1362	7	1	0	6	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0007	1362	4	4	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0008	1362	3	3	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0009	1362	3	0	2	1	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0010	1362	2	0	1	0	1	0	copy fasta	SMPDL3A	chr6	122784258	122814720