JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMPDL3A_chr6_122784258_122814720	0/0	c0011	1362	2	0	2	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0012	1362	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0013	1362	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0014	1362	1	0	0	0	0	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0015	1362	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0016	1362	1	0	0	0	0	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0017	1362	1	0	0	1	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0018	1362	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0019	1362	1	0	0	1	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0020	1362	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	c0021	1362	1	0	0	0	0	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3B_chr1_27930000_27964152	1/1	c0001	1368	222	66	26	99	5	24	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0002	1368	92	16	15	49	3	9	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0003	1368	83	6	18	41	10	8	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0004	1368	11	0	8	2	0	1	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0005	1368	6	0	6	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0006	1368	4	4	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0007	1368	2	2	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0008	1368	2	0	2	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0009	1368	2	0	2	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0010	1368	2	0	2	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0011	1368	1	1	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0012	1368	1	0	0	1	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0013	1368	1	1	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0014	1368	1	0	1	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0015	1368	1	0	0	0	0	1	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	c0016	1368	1	0	0	0	0	1	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPX_chrX_21700978_21763116	1/1	c0001	267	288	76	50	120	11	29	copy fasta	SMPX	chrX	21700978	21763116
SMPX_chrX_21700978_21763116	0/0	c0002	267	1	0	0	0	0	1	copy fasta	SMPX	chrX	21700978	21763116
SMR3A_chr4_70355760_70372158	0/0	c0000	0	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/1	c0001	405	242	39	39	132	8	23	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0002	405	131	11	16	82	6	16	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0003	405	44	37	6	0	0	1	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	1/0	c0004	405	18	13	3	0	0	1	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0005	405	17	0	9	7	0	1	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0006	405	1	0	1	0	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0007	405	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0008	405	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0009	405	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	c0010	405	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3B_chr4_70378131_70395244	1/1	c0001	240	461	100	77	218	16	48	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	c0002	240	1	0	1	0	0	0	copy fasta	SMR3B	chr4	70378131	70395244
SMS_chrX_21935709_21999837	1/1	c0001	1101	292	73	46	128	13	30	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	c0002	1101	2	0	2	0	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	c0003	1101	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	c0004	1101	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	c0005	1101	1	1	0	0	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	c0006	1101	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMTNL1_chr11_57532595_57555272	0/1	c0001	1485	162	28	35	77	5	16	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	1/0	c0002	1485	157	40	37	59	7	13	copy fasta	SMTNL1	chr11	57532595	57555272