JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMTNL1_chr11_57532595_57555272	0/0	c0003	1485	22	5	3	11	1	2	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0004	1485	10	9	1	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0005	1485	3	3	0	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0006	1485	2	0	1	0	1	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0007	1485	2	2	0	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0008	1485	2	2	0	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0009	1485	1	0	1	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0010	1485	1	1	0	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0011	1485	1	0	0	1	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0012	1485	1	0	0	1	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0013	1485	1	0	0	1	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	c0014	1485	1	0	0	0	0	1	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL2_chr17_4579529_4613319	0/0	c0001	1386	154	3	39	98	4	10	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/1	c0002	1386	112	24	26	44	3	14	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	1/0	c0003	1386	42	24	2	14	0	1	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0004	1386	39	0	7	20	2	10	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0005	1386	17	11	1	5	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0006	1386	13	12	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0007	1386	12	3	2	0	4	3	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0008	1386	7	1	0	4	0	2	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0009	1386	7	6	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0010	1386	6	0	1	3	2	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0011	1386	5	4	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0012	1386	4	1	0	0	0	3	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0013	1386	3	3	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0014	1386	2	0	2	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0015	1386	2	0	0	2	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0016	1386	2	2	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0017	1386	2	2	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0018	1386	1	0	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0019	1386	1	0	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0020	1386	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0021	1386	1	0	0	0	1	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0022	1386	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0023	1386	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0024	1386	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0025	1386	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0026	1386	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0027	1386	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0028	1386	1	0	0	0	0	1	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0029	1386	1	0	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	c0030	1386	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTN_chr22_31076318_31109624	1/0	c0001	2748	174	20	32	108	4	9	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0002	2748	76	18	24	5	6	23	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/1	c0003	2748	42	14	5	17	2	3	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0004	2748	17	17	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0005	2748	13	0	4	8	0	1	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0006	2748	6	6	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0007	2748	5	1	2	0	1	1	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0008	2748	5	5	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624