JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMTN_chr22_31076318_31109624	0/0	c0009	2748	3	0	0	3	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0010	2748	3	0	0	0	0	3	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0011	2748	2	2	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0012	2748	2	2	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0013	2748	2	0	0	0	0	2	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0014	2748	2	0	0	0	0	2	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0015	2748	1	0	1	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0016	2781	1	0	0	1	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0017	2748	1	0	0	0	1	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0018	2748	1	0	1	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0019	2748	1	1	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0020	2748	1	0	0	1	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0021	2748	1	0	0	1	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0022	2748	1	0	1	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0023	2748	1	0	0	0	0	1	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	c0024	2748	1	0	0	0	0	1	copy fasta	SMTN	chr22	31076318	31109624
SMU1_chr9_33036765_33081674	1/1	c0001	1542	370	85	63	180	8	32	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	c0002	1542	35	0	12	21	0	2	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	c0003	1542	5	4	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	c0004	1542	3	0	0	3	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	c0005	1542	2	0	0	0	0	2	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	c0006	1542	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	c0007	1542	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	c0008	1542	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMUG1_chr12_54175366_54193985	1/1	c0001	813	417	76	79	198	18	44	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	c0002	813	9	9	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	c0003	813	7	6	1	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	c0004	800	1	0	0	0	0	1	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	c0005	813	1	1	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	c0006	813	1	0	0	0	0	1	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	c0007	813	1	0	0	1	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	c0008	813	1	0	0	1	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMURF1_chr7_99022440_99149108	0/1	c0001	2196	190	74	31	61	11	12	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	1/0	c0002	2196	64	1	19	29	5	9	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	c0003	2196	4	4	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	c0004	2196	2	2	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	c0005	2196	1	0	0	1	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	c0006	2196	1	0	0	1	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	c0007	2196	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	c0008	2196	1	0	0	0	0	1	copy fasta	SMURF1	chr7	99022440	99149108
SMURF2_chr17_64537282_64667307	1/1	c0001	2247	143	56	39	27	4	15	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	c0002	2247	19	17	1	1	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	c0003	2247	6	6	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	c0004	2247	2	1	0	0	0	1	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	c0005	2247	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	c0006	2247	1	0	0	0	0	1	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	c0007	2247	1	0	0	0	0	1	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	c0008	2247	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMYD1_chr2_88062825_88118384	0/1	c0001	1473	82	2	23	43	5	8	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0002	1473	57	0	2	46	0	9	copy fasta	SMYD1	chr2	88062825	88118384