JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMYD1_chr2_88062825_88118384	1/0	c0003	1473	44	22	13	4	3	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0004	1473	27	20	2	0	0	5	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0005	1473	26	1	9	13	3	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0006	1473	24	13	3	0	2	6	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0007	1473	12	0	4	8	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0008	1473	12	5	2	1	1	3	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0009	1473	11	10	1	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0010	1473	7	5	1	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0011	1473	6	1	3	0	2	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0012	1473	6	0	0	6	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0013	1473	5	0	0	4	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0014	1473	5	5	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0015	1473	3	3	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0016	1473	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0017	1473	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0018	1473	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0019	1473	1	0	0	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0020	1473	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0021	1473	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0022	1473	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0023	1473	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0024	1473	1	0	0	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0025	1473	1	0	1	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	c0026	1473	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD2_chr1_214276159_214342131	0/1	c0001	1302	285	91	49	104	13	27	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	c0002	1302	55	0	14	39	0	2	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	1/0	c0003	1302	30	1	3	17	0	8	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	c0004	1302	4	4	0	0	0	0	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	c0005	1302	3	0	2	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	c0006	1302	1	0	0	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	c0007	1302	1	0	0	0	1	0	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	c0008	1302	1	0	0	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD3_chr1_245744347_246512279	0/0	c0001	1287	53	8	15	26	0	4	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0002	1287	28	5	9	7	2	5	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0003	1287	27	17	3	6	0	1	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0004	1287	12	9	1	2	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0005	1287	7	7	0	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0006	1287	6	4	2	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0007	1287	5	4	1	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0008	1287	3	1	2	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0009	1287	1	1	0	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0010	1287	1	1	0	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0011	1287	1	0	0	0	0	1	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0012	1287	1	0	0	1	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0013	1287	1	0	0	0	0	1	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0014	1287	1	0	0	1	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0015	1287	1	0	0	1	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0016	1287	1	0	1	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	c0017	1287	1	1	0	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD4_chr17_1774485_1834902	0/0	c0001	2415	83	2	19	51	3	8	copy fasta	SMYD4	chr17	1774485	1834902