JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMYD4_chr17_1774485_1834902	0/0	c0002	2415	60	10	16	24	5	5	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0003	2415	35	2	7	20	2	4	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	1/0	c0004	2415	24	3	4	13	0	3	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0005	2415	22	10	0	11	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0006	2415	18	3	6	9	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0007	2415	14	6	2	5	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0008	2415	14	0	4	3	2	5	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0009	2415	11	1	0	8	0	2	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0010	2415	9	9	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0011	2415	9	6	0	3	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0012	2415	9	2	1	6	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0013	2415	9	4	1	4	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0014	2415	9	2	0	7	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0015	2415	8	8	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/1	c0016	2415	8	0	0	6	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0017	2415	6	5	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0018	2415	5	5	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0019	2415	5	0	2	2	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0020	2415	4	4	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0021	2415	3	3	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0022	2415	3	0	2	1	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0023	2415	2	1	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0024	2415	2	0	0	0	2	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0025	2415	2	0	2	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0026	2415	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0027	2415	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0028	2415	1	0	0	1	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0029	2415	1	0	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0030	2415	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0031	2415	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0032	2415	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0033	2415	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0034	2415	1	0	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0035	2415	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0036	2415	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0037	2415	1	0	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0038	2415	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	c0039	2415	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD5_chr2_73209245_73232221	1/1	c0001	1257	358	93	65	148	14	36	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	c0002	1257	7	0	0	7	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	c0003	1257	4	3	1	0	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	c0004	1257	1	0	1	0	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	c0005	1257	1	0	1	0	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	c0006	1257	1	0	0	1	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SNAI1_chr20_49977980_49993886	1/0	c0001	795	313	22	51	192	14	33	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/1	c0002	795	113	58	19	25	1	9	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/0	c0003	795	11	9	2	0	0	0	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/0	c0004	795	1	1	0	0	0	0	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/0	c0005	795	1	0	0	1	0	0	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/0	c0006	795	1	0	0	0	1	0	copy fasta	SNAI1	chr20	49977980	49993886