JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP8B3_chr19_1777075_1817276	0/0	c0054	3903	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0055	3903	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0056	3903	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0057	3903	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0058	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0059	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0060	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0061	3903	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0062	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0063	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0064	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0065	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0066	3903	1	0	0	0	1	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0067	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0068	3903	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0069	3903	1	0	1	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0070	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0071	3903	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0072	3903	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0073	3903	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0074	3903	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	c0075	3903	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B4_chr15_49853238_50124233	0/1	c0001	3579	84	29	16	15	10	13	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	1/0	c0002	3579	73	7	22	30	1	12	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0003	3579	57	11	11	25	5	5	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0004	3579	7	7	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0005	3579	6	4	0	1	0	1	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0006	3579	4	4	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0007	3579	3	3	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0008	3579	3	3	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0009	3579	2	2	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0010	3579	2	2	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0011	3579	2	1	0	0	0	1	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0012	3579	2	2	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0013	3579	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0014	3579	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0015	3579	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0016	3579	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0017	3579	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0018	3579	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0019	3579	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0020	3579	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	c0021	3579	1	0	1	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP9A_chr20_51591514_51773390	0/0	c0001	3144	169	29	33	88	5	14	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0002	3144	43	14	16	0	6	7	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	1/0	c0003	3144	38	29	3	1	2	2	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0004	3144	34	3	10	15	2	4	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0005	3144	8	8	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0006	3144	2	0	2	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0007	3144	2	0	2	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390