JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNAI2_chr8_48912598_48926429	1/1	c0001	807	398	90	82	164	16	44	copy fasta	SNAI2	chr8	48912598	48926429
SNAI3_chr16_88672688_88691507	1/1	c0001	879	373	72	76	157	18	48	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0002	879	6	6	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0003	879	4	4	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0004	879	4	4	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0005	879	3	0	0	3	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0006	879	2	0	2	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0007	879	2	0	2	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0008	879	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0009	879	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0010	879	1	0	0	1	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0011	879	1	0	0	1	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0012	879	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	c0013	879	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAP23_chr15_42490634_42538058	1/1	c0001	636	215	32	55	95	6	25	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	c0002	636	91	62	17	1	4	7	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	c0003	636	2	0	0	2	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP25_chr20_10213830_10312418	1/1	c0001	621	284	75	61	106	12	28	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	c0002	621	56	15	7	32	0	2	copy fasta	SNAP25	chr20	10213830	10312418
SNAP29_chr22_20854007_20896214	1/0	c0001	777	225	70	40	86	7	21	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/1	c0002	777	135	17	35	56	5	21	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	c0003	777	17	0	3	14	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	c0004	777	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	c0005	777	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	c0006	777	1	1	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP47_chr1_227730435_227786226	0/0	c0001	1260	146	39	36	47	9	15	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	1/1	c0002	1260	115	35	21	38	5	14	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0003	1260	78	12	13	42	1	10	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0004	1260	23	0	0	21	2	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0005	1260	9	9	0	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0006	1260	9	0	0	9	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0007	1260	8	0	5	0	1	2	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0008	1260	2	0	0	0	0	2	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0009	1260	1	0	0	1	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0010	1260	1	1	0	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0011	1260	1	0	0	1	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0012	1260	1	0	0	0	0	1	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0013	1260	1	0	1	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	c0014	1260	1	0	0	1	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP91_chr6_83547885_83714101	0/1	c0001	2724	222	60	41	97	5	18	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0002	2724	59	1	4	42	4	8	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	1/0	c0003	2724	44	3	11	16	4	9	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0004	2724	16	12	4	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0005	2724	3	3	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0006	2724	2	2	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0007	2724	2	2	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0008	2724	2	0	2	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0009	2724	2	0	0	2	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0010	2724	2	0	0	2	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0011	2724	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101