JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNAP91_chr6_83547885_83714101	0/0	c0012	2724	1	0	0	1	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0013	2724	1	0	0	0	1	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0014	2724	1	0	0	0	0	1	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0015	2724	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0016	2724	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0017	2724	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0018	2724	1	0	0	1	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0019	2724	1	0	0	1	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0020	2724	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0021	2724	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	c0022	2724	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAPC1_chr14_61757420_61801428	1/1	c0001	1107	332	77	73	143	8	29	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	c0002	1107	13	10	0	0	0	3	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	c0003	1107	8	0	0	8	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	c0004	1107	1	0	0	1	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	c0005	1107	1	0	1	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	c0006	1107	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC2_chr19_7915338_7928250	1/0	c0001	1005	234	61	45	89	9	29	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/1	c0002	1005	187	27	39	94	9	17	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	c0003	1005	3	3	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	c0004	1005	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	c0005	1005	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	c0006	1005	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	c0007	1005	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	c0008	1005	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	c0009	1005	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC3_chr9_15417876_15466626	1/1	c0001	1236	276	57	46	131	4	36	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0002	1236	13	12	1	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0003	1236	8	4	3	0	0	1	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0004	1236	6	6	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0005	1236	1	0	0	1	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0006	1236	1	1	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0007	1236	1	0	0	0	0	1	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0008	1234	1	1	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	c0009	1236	1	1	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC4_chr9_136370571_136405170	0/0	c0001	4410	121	38	10	68	0	5	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0002	4407	50	11	20	12	1	6	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0003	4410	45	2	14	20	4	5	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	1/0	c0004	4410	28	1	12	0	3	11	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0005	4410	25	0	0	22	1	2	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0006	4410	24	0	9	0	5	10	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0007	4410	9	9	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0008	4410	8	0	2	0	3	3	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0009	4416	6	4	2	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0010	4410	4	1	3	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0011	4410	4	0	3	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0012	4410	3	3	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0013	4410	3	3	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0014	4410	2	2	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0015	4407	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170