JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNAPC4_chr9_136370571_136405170	0/0	c0016	4407	2	2	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0017	4410	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0018	4410	2	0	1	0	1	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0019	4410	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0020	4410	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0021	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0022	4416	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0023	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0024	4410	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0025	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0026	4410	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/1	c0027	4410	1	0	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0028	4410	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0029	4410	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0030	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0031	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0032	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0033	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0034	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0035	4410	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0036	4407	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0037	4407	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0038	4407	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0039	4407	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0040	4407	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0041	4407	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0042	4410	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0043	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0044	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0045	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0046	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0047	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0048	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0049	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0050	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0051	4410	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0052	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0053	4410	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0054	4410	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0055	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	c0056	4410	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC5_chr15_66488468_66502762	1/1	c0001	297	426	93	80	191	18	42	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	c0002	297	1	1	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	c0003	297	1	0	0	1	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPIN_chr1_153653703_153666852	1/1	c0001	411	387	92	69	173	12	39	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	c0002	411	6	2	2	0	2	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	c0003	411	4	4	0	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	c0004	411	1	0	0	0	0	1	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	c0005	411	1	0	1	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	c0006	411	1	0	0	1	0	0	copy fasta	SNAPIN	chr1	153653703	153666852