JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNCAIP_chr5_122307237_122469219	1/1	c0001	2760	207	57	40	79	5	24	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0002	2760	3	3	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0003	2760	2	1	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0004	2760	1	0	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0005	2760	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0006	2760	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0007	2760	1	0	0	1	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0008	2760	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0009	2760	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0010	2760	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0011	2760	1	0	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0012	2760	1	0	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	c0013	2760	1	0	0	0	1	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCA_chr4_89719099_89842161	0/0	c0001	423	336	81	64	148	10	33	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	c0002	423	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	c0003	423	1	0	0	0	0	1	copy fasta	SNCA	chr4	89719099	89842161
SNCB_chr5_176615082_176635534	1/1	c0001	405	435	96	82	197	12	46	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	c0002	405	1	0	0	1	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCG_chr10_86953599_86968258	1/1	c0001	384	313	63	60	142	10	36	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	c0002	384	64	14	14	16	8	12	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	c0003	384	9	8	1	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	c0004	384	7	6	1	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	c0005	384	4	4	0	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	c0006	384	1	1	0	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	c0007	384	1	0	0	1	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	c0008	384	1	0	0	1	0	0	copy fasta	SNCG	chr10	86953599	86968258
SND1_chr7_127647194_128097593	0/1	c0001	2733	161	55	33	43	9	20	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	1/0	c0002	2733	75	3	17	39	5	10	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0003	2733	8	0	0	8	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0004	2733	6	6	0	0	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0005	2754	3	0	0	0	0	3	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0006	2733	3	3	0	0	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0007	2733	2	2	0	0	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0008	2754	1	0	0	0	0	1	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0009	2733	1	0	0	1	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0010	2733	1	1	0	0	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	c0011	2733	1	0	0	1	0	0	copy fasta	SND1	chr7	127647194	128097593
SNED1_chr2_240993618_241100568	1/0	c0001	4242	68	7	11	30	4	15	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/1	c0002	4242	35	1	8	10	3	12	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0003	4242	30	2	6	20	0	2	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0004	4242	24	0	1	22	1	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0005	4242	13	0	4	9	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0006	4242	11	0	0	10	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0007	4242	10	0	3	7	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0008	4242	9	3	2	2	1	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0009	4242	7	5	1	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0010	4242	6	6	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0011	4242	6	6	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0012	4242	5	0	3	1	1	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0013	4242	5	4	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568