JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNED1_chr2_240993618_241100568	0/0	c0064	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0065	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0066	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0067	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0068	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0069	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0070	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0071	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0072	4242	1	0	0	0	1	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0073	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0074	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0075	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0076	4232	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0077	4242	1	0	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0078	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0079	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0080	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0081	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0082	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0083	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	c0084	4242	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNF8_chr17_48924316_48949842	1/1	c0001	777	284	58	50	135	12	27	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	c0002	777	93	21	24	40	2	6	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	c0003	777	13	9	0	1	0	3	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	c0004	777	1	0	0	0	0	1	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	c0005	777	1	0	0	0	0	1	copy fasta	SNF8	chr17	48924316	48949842
SNIP1_chr1_37529449_37559293	1/1	c0001	1191	280	78	52	102	11	35	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	c0002	1191	109	7	26	66	3	7	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	c0003	1191	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	c0004	1191	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	c0005	1191	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	c0006	1191	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	c0007	1191	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNN_chr16_11663455_11684152	1/1	c0001	267	327	79	62	146	10	28	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	c0002	267	108	8	17	62	6	15	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	c0003	267	4	3	1	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	c0004	267	1	0	0	0	0	1	copy fasta	SNN	chr16	11663455	11684152
SNORC_chr2_232865264_232883700	1/1	c0001	366	444	97	77	202	18	48	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	c0002	366	3	0	3	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	c0003	366	3	0	0	3	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	c0004	366	1	0	0	1	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	c0005	366	1	1	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNPH_chr20_1261294_1314327	1/1	c0001	1617	176	48	38	59	10	19	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0002	1617	147	32	22	73	6	14	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0003	1617	4	3	1	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0004	1617	4	0	4	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0005	1617	3	0	1	0	0	2	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0006	1617	2	2	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0007	1617	2	0	0	2	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0008	1617	2	1	0	0	0	1	copy fasta	SNPH	chr20	1261294	1314327