JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNPH_chr20_1261294_1314327	0/0	c0009	1617	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0010	1617	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0011	1617	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0012	1617	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0013	1617	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0014	1617	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0015	1617	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0016	1617	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0017	1617	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	c0018	1617	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNRK_chr3_43281540_43356143	1/0	c0001	2298	218	50	54	81	7	25	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0002	2298	14	12	2	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0003	2298	12	12	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0004	2298	6	4	2	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/1	c0005	2298	2	1	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0006	2298	1	0	0	0	0	1	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0007	2298	1	1	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0008	2298	1	1	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0009	2298	1	0	0	1	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0010	2298	1	0	0	0	1	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	c0011	2298	1	1	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRNP200_chr2_96269338_96310546	1/0	c0001	6411	112	54	15	33	5	4	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0002	6411	99	5	26	58	4	6	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0003	6411	91	1	23	50	1	16	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0004	6411	10	10	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0005	6411	10	0	0	10	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0006	6411	7	0	0	7	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0007	6411	3	3	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0008	6411	3	0	0	0	0	3	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0009	6411	2	0	1	0	1	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0010	6411	2	0	2	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0011	6411	1	0	0	0	0	1	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0012	6411	1	0	0	1	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0013	6411	1	0	0	0	1	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0014	6411	1	1	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0015	6411	1	0	0	0	0	1	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0016	6411	1	0	0	1	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/1	c0017	6411	1	0	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0018	6411	1	0	0	1	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0019	6411	1	0	0	0	0	1	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0020	6411	1	1	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0021	6411	1	0	1	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0022	6411	1	0	0	1	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	c0023	6411	1	1	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP25_chr16_48828_62669	1/1	c0001	372	411	89	73	182	18	47	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	c0002	372	8	5	3	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	c0003	372	2	1	1	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	c0004	372	1	0	1	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	c0005	372	1	1	0	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	c0006	372	1	0	0	0	0	1	copy fasta	SNRNP25	chr16	48828	62669